PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26506A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 313aa    MW: 34174.4 Da    PI: 9.4676
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26506AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.4e-30137200158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk......ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep++VNaKQy++Il+RRq+Rakle+++k      l   s +pylheSRh+hA++R+RgsgGrF
  Oropetium_20150105_26506A 137 EEPIFVNAKQYHAILRRRQARAKLEAQNKlvkvrkLIPFSSQPYLHESRHRHAMKRARGSGGRF 200
                                69***************************7777775567889*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-33135203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.561136203IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.0E-27138200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDFLSGNGYS VKQLAHSNSD GDTSSTKSEQ SRQDLSAVSD SSLNGEHTPI QSDNNESCGM  60
QDRSMMNSVL SLGNPEAAFS SQKDDYNQSF ACVSYPYAAD SYYGGILTGY TPHANVHPQI  120
TGTTNSRVPL PIEPAAEEPI FVNAKQYHAI LRRRQARAKL EAQNKLVKVR KLIPFSSQPY  180
LHESRHRHAM KRARGSGGRF LNKKELQDQQ LQKTPSESPR GGVSKMGNGG CNQCAESSTS  240
RFPSKLTXXX XXXXXXXGGG NPAHHQEHIS FSSINFLPSR NFSTEKGGEK MGVNSVCYHA  300
PTMRSTASIL GR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22137220278NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184193RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984046.11e-123PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A0A9LTJ81e-129A0A0A9LTJ8_ARUDO; Uncharacterized protein
STRINGSi036728m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.28e-35nuclear factor Y, subunit A3